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Main Program Functions List

 

Data

 

Preprocessing

Importing Gene Expression Data

 

Eliminating & Estimating Missing Values

Variables

 

Filtering

Genes and Gene Lists

 

Normalization

Exporting Data

 

Value Removal

 

Clustering

 

Other Functions

K-Means Clustering

 

Principal Components Analysis

Jarvis-Patrick Clustering

 

3D Score Plot

Agglomerative Hierarchical Clustering

 

Annotations

Self-Organizing Maps (SOMs)

 

Generating Reports

 

 

Generating and Running Scripts

 

Plots

 

Plot Functions

Matrix Tree Plot

 

Shared Selection

Centroid Plot

 

Profile Matching

Summary Statistics Chart

 

Color By Gene Lists or Variables

SOM Plot

 

Exporting Images

 

Platinum     SLAM

 

Platinum     IBIS

ANN Classification & Prediction Overview

 

IBIS Overview

SLAM Association Viewer

 

IBIS Search

Classification Plot

 

IBIS Gradient Plot

SVM Classification & Prediction Overview